Board replacement on Mini 1.04

Hey y’all I’m new to the boards. I swapped out the Rambo board on my mini 1.04 for a BTT SKR Mini E3 V3. Got most things working correctly in Marlin. Had to overwrite pins for the extra X and Y endstops and the resistance probe for the Z-nozzle leveling. I’m having issues getting the nozzle wipe to function correctly so I don’t know if that or leveling is right. Anyone have any help/advice? I think E-steps may be way off. Also should I keep the leveling and wipe techniques on the firmware or in the printer setup on Cura/others?